PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G077800.1
Common NameB456_008G077800, LOC105763378
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 510aa    MW: 57038.4 Da    PI: 6.2654
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G077800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-17159208155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.008G077800.1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                         78*******************......55************************998 PP

2AP243.58.1e-14251301155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Gorai.008G077800.1 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDRAAIKCNG 301
                         89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-9159208IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-15159217IPR016177DNA-binding domain
PROSITE profilePS5103217.728160216IPR001471AP2/ERF domain
SMARTSM003801.2E-31160222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-17160216IPR001471AP2/ERF domain
CDDcd000184.16E-11160215No hitNo description
SuperFamilySSF541712.75E-17251311IPR016177DNA-binding domain
CDDcd000181.29E-25251311No hitNo description
PfamPF008479.2E-10251301IPR001471AP2/ERF domain
SMARTSM003809.2E-32252315IPR001471AP2/ERF domain
PROSITE profilePS5103215.633252309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-16252309IPR001471AP2/ERF domain
PRINTSPR003677.0E-6253264IPR001471AP2/ERF domain
PRINTSPR003677.0E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MWDLNDSPYH QPIDDESEGC CSSQKTSIDG DEDKGKRVGS VSNSSSSALV LEEGSEEEDG  60
ERGRGGLKKR SSKIFGFSVP HEEEEEEEEE ESMESEAGPV TRQFFPVDQE QETGSSSGFP  120
QAHWVGVRFC QSEPHAPEKS GEVSQPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFSIQDY EEDLKQMSNL TKEEFVHVLR  240
RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDRAAIKCN  300
GKDAVTNFDP SIYDNELINS GKTSENAGDH NLDLSLGNSN PNQNSAKPNA DRQSGTSYQQ  360
HSLPLEATDW QCRGFRSMQE SRRIDEAGHG YSEEETMQLL SQTHIHSPAV SVKCNEMQRY  420
GQLRRPGGNS NIFHIVPQHI NPSPYQIHIP RSSNGGRIGS DLSLSTSDQQ WQSGPHHQLF  480
GNSAASSGFP SQIRPSQTWL HQNGFHSLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.11430.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488085490.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437062.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-128AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D2TZ720.0A0A0D2TZ72_G
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-119AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]